IL_5J91_012

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5J91|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0243

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5J91|1|AA|G|147
5J91|1|AA|G|148
5J91|1|AA|A|149
5J91|1|AA|U|150
5J91|1|AA|A|151
5J91|1|AA|A|152
5J91|1|AA|C|153
*
5J91|1|AA|G|168
5J91|1|AA|C|169
5J91|1|AA|U|170
5J91|1|AA|A|171
5J91|1|AA|A|172
5J91|1|AA|U|173
5J91|1|AA|A|174
5J91|1|AA|C|175

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20