IL_5J91_036

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_036 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.027

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5J91|1|AA|G|774
5J91|1|AA|G|775
5J91|1|AA|G|776
5J91|1|AA|A|777
5J91|1|AA|G|778
*
5J91|1|AA|U|804
5J91|1|AA|C|805

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DC

50S ribosomal protein L2