IL_5J91_041

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5J91|1|AA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_041 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0318

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5J91|1|AA|G|933
5J91|1|AA|C|934
5J91|1|AA|A|935
*
5J91|1|AA|U|1380
5J91|1|AA|U|1381
5J91|1|AA|C|1382
5J91|1|AA|C|1383
5J91|1|AA|C|1384

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9