IL_5J91_113
3D structure
- PDB id
- 5J91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Wild-type 70S E coli ribosome bound to Tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- GCUGCAU*AUG(2MG)C
- Length
- 12 nucleotides
- Bulged bases
- 5J91|1|BA|C|1054
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J91_113 not in the Motif Atlas
- Geometric match to IL_4V88_422
- Geometric discrepancy: 0.3646
- The information below is about IL_4V88_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
5J91|1|BA|G|1050
5J91|1|BA|C|1051
5J91|1|BA|U|1052
5J91|1|BA|G|1053
5J91|1|BA|C|1054
5J91|1|BA|A|1055
5J91|1|BA|U|1056
*
5J91|1|BA|A|1204
5J91|1|BA|U|1205
5J91|1|BA|G|1206
5J91|1|BA|2MG|1207
5J91|1|BA|C|1208
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BC
- 30S ribosomal protein S3
- Chain BJ
- 30S ribosomal protein S10
- Chain BN
- 30S ribosomal protein S14
Coloring options: