IL_5J91_125

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_125 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0407

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5J91|1|BA|G|1401
5J91|1|BA|4OC|1402
5J91|1|BA|C|1403
5J91|1|BA|C|1404
*
5J91|1|BA|G|1497
5J91|1|BA|UR3|1498
5J91|1|BA|A|1499
5J91|1|BA|A|1500
5J91|1|BA|C|1501

Current chains

Chain BA

16S rRNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA