IL_5J91_141

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_141 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.0447

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

5J91|1|CA|U|293
5J91|1|CA|A|294
5J91|1|CA|G|295
*
5J91|1|CA|C|343
5J91|1|CA|A|344
5J91|1|CA|A|345
5J91|1|CA|A|346
5J91|1|CA|A|347

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CV

50S ribosomal protein L24