IL_5J91_216

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_216 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.2911

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

5J91|1|CA|G|2110
5J91|1|CA|U|2111
5J91|1|CA|G|2112
5J91|1|CA|U|2113
5J91|1|CA|A|2114
5J91|1|CA|G|2115
5J91|1|CA|G|2116
5J91|1|CA|A|2117
5J91|1|CA|U|2118
5J91|1|CA|A|2119
5J91|1|CA|G|2120
5J91|1|CA|G|2121
*
5J91|1|CA|C|2177
5J91|1|CA|C|2178
5J91|1|CA|C|2179

Current chains

Chain CA

23S rRNA

Nearby chains