IL_5J91_227

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5J91|1|CA|G|2576, 5J91|1|CA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_227 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0757

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5J91|1|CA|C|2510
5J91|1|CA|U|2511
5J91|1|CA|C|2512
*
5J91|1|CA|G|2574
5J91|1|CA|C|2575
5J91|1|CA|G|2576
5J91|1|CA|A|2577
5J91|1|CA|G|2578

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3