IL_5JB3_012

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GAUUAG*CGAAGAUC

Length

14 nucleotides

Bulged bases

5JB3|1|2|U|240, 5JB3|1|2|A|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|G|238
5JB3|1|2|A|239
5JB3|1|2|U|240
5JB3|1|2|U|241
5JB3|1|2|A|242
5JB3|1|2|G|243
*
5JB3|1|2|C|273
5JB3|1|2|G|274
5JB3|1|2|A|275
5JB3|1|2|A|276
5JB3|1|2|G|277
5JB3|1|2|A|278
5JB3|1|2|U|279
5JB3|1|2|C|280

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S8e

Chain N

30S ribosomal protein S12

Chain R

30S ribosomal protein S17P