IL_5JB3_019

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GUGGCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5JB3|1|2|A|485, 5JB3|1|2|U|487, 5JB3|1|2|A|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|G|468
5JB3|1|2|U|469
5JB3|1|2|G|470
5JB3|1|2|G|471
5JB3|1|2|C|472
5JB3|1|2|A|473
5JB3|1|2|G|474
*
5JB3|1|2|C|481
5JB3|1|2|G|482
5JB3|1|2|G|483
5JB3|1|2|U|484
5JB3|1|2|A|485
5JB3|1|2|A|486
5JB3|1|2|U|487
5JB3|1|2|A|488
5JB3|1|2|C|489

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Translation initiation factor 1A

Chain N

30S ribosomal protein S12

Chain Z

30S ribosomal protein S3