IL_5JB3_023

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GCGAAAUC*GGCUCGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|G|557
5JB3|1|2|C|558
5JB3|1|2|G|559
5JB3|1|2|A|560
5JB3|1|2|A|561
5JB3|1|2|A|562
5JB3|1|2|U|563
5JB3|1|2|C|564
*
5JB3|1|2|G|582
5JB3|1|2|G|583
5JB3|1|2|C|584
5JB3|1|2|U|585
5JB3|1|2|C|586
5JB3|1|2|G|587
5JB3|1|2|C|588

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain E

30S ribosomal protein S4e

Chain I

30S ribosomal protein S8

Chain R

30S ribosomal protein S17P