IL_5JB3_061

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

UGCAUGG*UCAGUAUG

Length

15 nucleotides

Bulged bases

5JB3|1|2|C|1006, 5JB3|1|2|A|1161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|U|1004
5JB3|1|2|G|1005
5JB3|1|2|C|1006
5JB3|1|2|A|1007
5JB3|1|2|U|1008
5JB3|1|2|G|1009
5JB3|1|2|G|1010
*
5JB3|1|2|U|1159
5JB3|1|2|C|1160
5JB3|1|2|A|1161
5JB3|1|2|G|1162
5JB3|1|2|U|1163
5JB3|1|2|A|1164
5JB3|1|2|U|1165
5JB3|1|2|G|1166

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S10

Chain P

30S ribosomal protein S14 type Z

Chain Z

30S ribosomal protein S3