IL_5JB3_062

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CCAGUUGCCAGUCC*GAGGCACUCUGG

Length

26 nucleotides

Bulged bases

5JB3|1|2|U|1077, 5JB3|1|2|C|1081, 5JB3|1|2|C|1085, 5JB3|1|2|C|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|C|1073
5JB3|1|2|C|1074
5JB3|1|2|A|1075
5JB3|1|2|G|1076
5JB3|1|2|U|1077
5JB3|1|2|U|1078
5JB3|1|2|G|1079
5JB3|1|2|C|1080
5JB3|1|2|C|1081
5JB3|1|2|A|1082
5JB3|1|2|G|1083
5JB3|1|2|U|1084
5JB3|1|2|C|1085
5JB3|1|2|C|1086
*
5JB3|1|2|G|1101
5JB3|1|2|A|1102
5JB3|1|2|G|1103
5JB3|1|2|G|1104
5JB3|1|2|C|1105
5JB3|1|2|A|1106
5JB3|1|2|C|1107
5JB3|1|2|U|1108
5JB3|1|2|C|1109
5JB3|1|2|U|1110
5JB3|1|2|G|1111
5JB3|1|2|G|1112

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S9

Chain L

30S ribosomal protein S10

Chain U

30S ribosomal protein S19e