3D structure

PDB id
5JBH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
5.34 Å

Loop

Sequence
GAUAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
5JBH|1|2|U|158
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5JBH|1|2|G|133
5JBH|1|2|A|134
5JBH|1|2|U|135
5JBH|1|2|A|136
5JBH|1|2|A|137
5JBH|1|2|C|138
*
5JBH|1|2|G|153
5JBH|1|2|C|154
5JBH|1|2|U|155
5JBH|1|2|A|156
5JBH|1|2|A|157
5JBH|1|2|U|158
5JBH|1|2|C|159

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein eS6

Coloring options:

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