IL_5JBH_019

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GUGGCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5JBH|1|2|A|485, 5JBH|1|2|U|487, 5JBH|1|2|A|488

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|G|468
5JBH|1|2|U|469
5JBH|1|2|G|470
5JBH|1|2|G|471
5JBH|1|2|C|472
5JBH|1|2|A|473
5JBH|1|2|G|474
*
5JBH|1|2|C|481
5JBH|1|2|G|482
5JBH|1|2|G|483
5JBH|1|2|U|484
5JBH|1|2|A|485
5JBH|1|2|A|486
5JBH|1|2|U|487
5JBH|1|2|A|488
5JBH|1|2|C|489

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

aIF1A

Chain N

30S ribosomal protein uS12

Chain Z

30S ribosomal protein uS3