IL_5JBH_026

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GGGAGAG*UGGAAC

Length

13 nucleotides

Bulged bases

5JBH|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|G|614
5JBH|1|2|G|615
5JBH|1|2|G|616
5JBH|1|2|A|617
5JBH|1|2|G|618
5JBH|1|2|A|619
5JBH|1|2|G|620
*
5JBH|1|2|U|694
5JBH|1|2|G|695
5JBH|1|2|G|696
5JBH|1|2|A|697
5JBH|1|2|A|698
5JBH|1|2|C|699

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain A

30S ribosomal protein uS3

Chain Q

30S ribosomal protein uS15

Chain W

30S ribosomal protein eS27