IL_5JBH_034

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

ACUA*UCCCU

Length

9 nucleotides

Bulged bases

5JBH|1|2|C|892, 5JBH|1|2|U|893

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|A|891
5JBH|1|2|C|892
5JBH|1|2|U|893
5JBH|1|2|A|894
*
5JBH|1|2|U|1340
5JBH|1|2|C|1341
5JBH|1|2|C|1342
5JBH|1|2|C|1343
5JBH|1|2|U|1344

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain 5

mRNA

Chain H

30S ribosomal protein uS7

Chain K

30S ribosomal protein uS9

Chain S

30S ribosomal protein eS17

Chain X

30S ribosomal protein eS28