IL_5JBH_037

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GGAUGAAG*CGGAC

Length

13 nucleotides

Bulged bases

5JBH|1|2|U|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|G|958
5JBH|1|2|G|959
5JBH|1|2|A|960
5JBH|1|2|U|961
5JBH|1|2|G|962
5JBH|1|2|A|963
5JBH|1|2|A|964
5JBH|1|2|G|965
*
5JBH|1|2|C|985
5JBH|1|2|G|986
5JBH|1|2|G|987
5JBH|1|2|A|988
5JBH|1|2|C|989

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein uL30

Chain P

30S ribosomal protein uS14

Chain Y

30S ribosomal protein eS27