IL_5JBH_062

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CCAGUUGCCAGUCC*GAGGCACUCUGG

Length

26 nucleotides

Bulged bases

5JBH|1|2|U|1077, 5JBH|1|2|C|1081, 5JBH|1|2|C|1085, 5JBH|1|2|C|1105

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|C|1073
5JBH|1|2|C|1074
5JBH|1|2|A|1075
5JBH|1|2|G|1076
5JBH|1|2|U|1077
5JBH|1|2|U|1078
5JBH|1|2|G|1079
5JBH|1|2|C|1080
5JBH|1|2|C|1081
5JBH|1|2|A|1082
5JBH|1|2|G|1083
5JBH|1|2|U|1084
5JBH|1|2|C|1085
5JBH|1|2|C|1086
*
5JBH|1|2|G|1101
5JBH|1|2|A|1102
5JBH|1|2|G|1103
5JBH|1|2|G|1104
5JBH|1|2|C|1105
5JBH|1|2|A|1106
5JBH|1|2|C|1107
5JBH|1|2|U|1108
5JBH|1|2|C|1109
5JBH|1|2|U|1110
5JBH|1|2|G|1111
5JBH|1|2|G|1112

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein uS9

Chain L

30S ribosomal protein uS10

Chain U

30S ribosomal protein eS19