IL_5JBH_063

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GUCAC*GAAGUC

Length

11 nucleotides

Bulged bases

5JBH|1|2|A|1448

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|G|1365
5JBH|1|2|U|1366
5JBH|1|2|C|1367
5JBH|1|2|A|1368
5JBH|1|2|C|1369
*
5JBH|1|2|G|1446
5JBH|1|2|A|1447
5JBH|1|2|A|1448
5JBH|1|2|G|1449
5JBH|1|2|U|1450
5JBH|1|2|C|1451

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 0

30S ribosomal protein eL41

Chain 1

aIF1

Chain 5

mRNA

Chain 6

aIF1A

Chain N

30S ribosomal protein uS12