3D structure

PDB id
5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.03 Å

Loop

Sequence
GAAA*UGC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5JC9_009 not in the Motif Atlas
Homologous match to IL_5J7L_009
Geometric discrepancy: 0.0436
The information below is about IL_5J7L_009
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

5JC9|1|AA|G|128
5JC9|1|AA|A|129
5JC9|1|AA|A|130
5JC9|1|AA|A|131
*
5JC9|1|AA|U|231
5JC9|1|AA|G|232
5JC9|1|AA|C|233

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17
Chain AT
30S ribosomal protein S20

Coloring options:


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