IL_5JC9_077

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5JC9|1|BA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_077 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.045

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5JC9|1|BA|G|147
5JC9|1|BA|G|148
5JC9|1|BA|A|149
5JC9|1|BA|U|150
5JC9|1|BA|A|151
5JC9|1|BA|A|152
5JC9|1|BA|C|153
*
5JC9|1|BA|G|168
5JC9|1|BA|C|169
5JC9|1|BA|U|170
5JC9|1|BA|A|171
5JC9|1|BA|A|172
5JC9|1|BA|U|173
5JC9|1|BA|A|174
5JC9|1|BA|C|175

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BT

30S ribosomal protein S20