IL_5JC9_113

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

5JC9|1|BA|C|1200, 5JC9|1|BA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_113 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.0483

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5JC9|1|BA|G|1057
5JC9|1|BA|G|1058
*
5JC9|1|BA|U|1199
5JC9|1|BA|C|1200
5JC9|1|BA|A|1201
5JC9|1|BA|U|1202
5JC9|1|BA|C|1203

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BJ

30S ribosomal protein S10

Chain BN

30S ribosomal protein S14