IL_5JC9_137

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_137 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0517

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5JC9|1|CA|C|239
5JC9|1|CA|C|240
5JC9|1|CA|A|241
5JC9|1|CA|G|242
5JC9|1|CA|U|243
5JC9|1|CA|A|244
5JC9|1|CA|G|245
*
5JC9|1|CA|C|253
5JC9|1|CA|G|254
5JC9|1|CA|A|255
5JC9|1|CA|A|256
5JC9|1|CA|C|257
5JC9|1|CA|G|258

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CM

50S ribosomal protein L15