IL_5JC9_140

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_140 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.0786

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

5JC9|1|CA|U|293
5JC9|1|CA|A|294
5JC9|1|CA|G|295
*
5JC9|1|CA|C|343
5JC9|1|CA|A|344
5JC9|1|CA|A|345
5JC9|1|CA|A|346
5JC9|1|CA|A|347

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CV

50S ribosomal protein L24