IL_5JC9_149

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_149 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0798

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5JC9|1|CA|U|703
5JC9|1|CA|G|704
5JC9|1|CA|A|705
5JC9|1|CA|A|706
5JC9|1|CA|G|707
*
5JC9|1|CA|U|724
5JC9|1|CA|G|725
5JC9|1|CA|G|726
5JC9|1|CA|A|727
5JC9|1|CA|G|728

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2