IL_5JC9_262
3D structure
- PDB id
- 5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.03 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5JC9|1|DA|G|801, 5JC9|1|DA|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JC9_262 not in the Motif Atlas
- Homologous match to IL_5J7L_260
- Geometric discrepancy: 0.0302
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JC9|1|DA|G|674
5JC9|1|DA|A|675
5JC9|1|DA|A|676
5JC9|1|DA|A|677
5JC9|1|DA|C|678
*
5JC9|1|DA|G|799
5JC9|1|DA|A|800
5JC9|1|DA|G|801
5JC9|1|DA|A|802
5JC9|1|DA|U|803
5JC9|1|DA|A|804
5JC9|1|DA|G|805
5JC9|1|DA|C|806
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DE
- 50S ribosomal protein L4
- Chain DM
- 50S ribosomal protein L15
Coloring options: