IL_5JC9_262

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5JC9|1|DA|G|801, 5JC9|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_262 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0302

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5JC9|1|DA|G|674
5JC9|1|DA|A|675
5JC9|1|DA|A|676
5JC9|1|DA|A|677
5JC9|1|DA|C|678
*
5JC9|1|DA|G|799
5JC9|1|DA|A|800
5JC9|1|DA|G|801
5JC9|1|DA|A|802
5JC9|1|DA|U|803
5JC9|1|DA|A|804
5JC9|1|DA|G|805
5JC9|1|DA|C|806

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15