3D structure

PDB id
5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.03 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
5JC9|1|DA|G|801, 5JC9|1|DA|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5JC9_262 not in the Motif Atlas
Homologous match to IL_5J7L_260
Geometric discrepancy: 0.0302
The information below is about IL_5J7L_260
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

5JC9|1|DA|G|674
5JC9|1|DA|A|675
5JC9|1|DA|A|676
5JC9|1|DA|A|677
5JC9|1|DA|C|678
*
5JC9|1|DA|G|799
5JC9|1|DA|A|800
5JC9|1|DA|G|801
5JC9|1|DA|A|802
5JC9|1|DA|U|803
5JC9|1|DA|A|804
5JC9|1|DA|G|805
5JC9|1|DA|C|806

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DE
50S ribosomal protein L4
Chain DM
50S ribosomal protein L15

Coloring options:


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