IL_5JC9_269

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_269 not in the Motif Atlas

Geometric match to IL_5J7L_267

Geometric discrepancy: 0.0382

The information below is about IL_5J7L_267

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5JC9|1|DA|A|844
5JC9|1|DA|A|845||A
5JC9|1|DA|U|846||A
5JC9|1|DA|U|847||A
*
5JC9|1|DA|A|933
5JC9|1|DA|U|934

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L30