3D structure

PDB id
5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.03 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5JC9_272 not in the Motif Atlas
Geometric match to IL_5J7L_270
Geometric discrepancy: 0.0278
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

5JC9|1|DA|G|856
5JC9|1|DA|G|857
5JC9|1|DA|G|858
5JC9|1|DA|G|859
5JC9|1|DA|U|860
5JC9|1|DA|A|861
5JC9|1|DA|G|862
*
5JC9|1|DA|C|915
5JC9|1|DA|G|916
5JC9|1|DA|A|917
5JC9|1|DA|A|918
5JC9|1|DA|U|919
5JC9|1|DA|A|920
5JC9|1|DA|C|921

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D0
50S ribosomal protein L30
Chain DB
5S ribosomal RNA; 5S rRNA
Chain DN
50S ribosomal protein L16
Chain DX
50S ribosomal protein L27

Coloring options:


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