IL_5JC9_293

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_293 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0372

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

5JC9|1|DA|C|1319
5JC9|1|DA|C|1320
5JC9|1|DA|A|1321
5JC9|1|DA|A|1322
5JC9|1|DA|C|1323
*
5JC9|1|DA|G|1331
5JC9|1|DA|G|1332
5JC9|1|DA|G|1333

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L22

Chain DU

50S ribosomal protein L23