IL_5JC9_299

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

5JC9|1|DA|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_299 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0302

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5JC9|1|DA|C|1437
5JC9|1|DA|U|1438
5JC9|1|DA|A|1439
5JC9|1|DA|U|1440
*
5JC9|1|DA|A|1551
5JC9|1|DA|A|1552
5JC9|1|DA|A|1553
5JC9|1|DA|U|1554
5JC9|1|DA|G|1555

Current chains

Chain DA

23S rRNA

Nearby chains