IL_5JC9_342

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5JC9|1|DA|G|2576, 5JC9|1|DA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_342 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0324

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5JC9|1|DA|C|2510
5JC9|1|DA|U|2511
5JC9|1|DA|C|2512
*
5JC9|1|DA|G|2574
5JC9|1|DA|C|2575
5JC9|1|DA|G|2576
5JC9|1|DA|A|2577
5JC9|1|DA|G|2578

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3