IL_5JC9_367

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CGGCAU*AUG(2MG)

Length

10 nucleotides

Bulged bases

5JC9|1|AA|C|1054

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_367 not in the Motif Atlas

Homologous match to IL_5J7L_362

Geometric discrepancy: 0.0737

The information below is about IL_5J7L_362

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49612.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5JC9|1|AA|C|1051
5JC9|1|AA|G|1052
5JC9|1|AA|G|1053
5JC9|1|AA|C|1054
5JC9|1|AA|A|1055
5JC9|1|AA|U|1056
*
5JC9|1|AA|A|1204
5JC9|1|AA|U|1205
5JC9|1|AA|G|1206
5JC9|1|AA|2MG|1207

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14