IL_5JC9_372

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_372 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.3326

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5JC9|1|BA|U|952
5JC9|1|BA|G|953
5JC9|1|BA|G|954
*
5JC9|1|BA|C|1226
5JC9|1|BA|A|1227
5JC9|1|BA|C|1228
5JC9|1|BA|A|1229

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BM

30S ribosomal protein S13

Chain BS

30S ribosomal protein S19