IL_5JC9_383

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5JC9|1|CA|U|2111, 5JC9|1|CA|G|2115, 5JC9|1|CA|U|2118, 5JC9|1|CA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_383 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.5071

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5JC9|1|CA|G|2110
5JC9|1|CA|U|2111
5JC9|1|CA|G|2112
5JC9|1|CA|U|2113
5JC9|1|CA|A|2114
5JC9|1|CA|G|2115
5JC9|1|CA|G|2116
5JC9|1|CA|A|2117
5JC9|1|CA|U|2118
5JC9|1|CA|A|2119
5JC9|1|CA|G|2120
*
5JC9|1|CA|C|2178
5JC9|1|CA|C|2179

Current chains

Chain CA

23S rRNA

Nearby chains