IL_5JC9_387

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

(PSU)GA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_387 not in the Motif Atlas

Homologous match to IL_5J7L_393

Geometric discrepancy: 0.057

The information below is about IL_5J7L_393

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5JC9|1|CA|PSU|2457
5JC9|1|CA|G|2458
5JC9|1|CA|A|2459
*
5JC9|1|CA|U|2493
5JC9|1|CA|G|2494

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein L16