Motif IL_07039.3 Version IL_07039.3 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_393 | 5J7L | 0.4350 | 0 | Major groove platform | DA | LSU rRNA | PSU | 2457 | G | 2458 | A | 2459 | * | U | 2493 | G | 2494 | cWW | ntSH | cWW | |
| 2 | IL_5J7L_394 | 5J7L | 0.3559 | 0 | Major groove platform | DA | LSU rRNA | PSU | 2580 | G | 2581 | G | 2582 | * | C | 2507 | G | 2508 | cWW | chH | cWW | |
| 3 | IL_4V9F_083 | 4V9F | 0.1982 | 0 | Major groove platform | 0 | LSU rRNA | U | 2492 | C | 2493 | G | 2494 | * | U | 2528 | G | 2529 | cWW | cHH | cWW | |
| 4 | IL_8P9A_331 | 8P9A | 0.2389 | 0 | Major groove platform (H) | AR | LSU rRNA | U | 2826 | U | 2827 | G | 2828 | * | U | 2862 | G | 2863 | cWW | cWW | ||
| 5 | IL_8CRE_112 | 8CRE | 0.2248 | 0 | Major groove platform (H) | 1 | LSU rRNA | U | 2798 | U | 2799 | G | 2800 | * | U | 2834 | G | 2835 | cWW | cWW | ||
| 6 | IL_7A0S_088 | 7A0S | 0.1659 | 0 | Major groove platform | X | LSU rRNA | U | 2559 | G | 2560 | G | 2561 | * | C | 2486 | G | 2487 | cWW | chH | cWW | |
| 7 | IL_9DFE_096 | 9DFE | 0.1325 | 0 | Major groove platform (H) | 1A | LSU rRNA | U | 2580 | G | 2581 | G | 2582 | * | C | 2507 | G | 2508 | cWW | chH | cWW | |
| 8 | IL_4WF9_094 | 4WF9 | 0.0971 | 0 | Major groove platform | X | LSU rRNA | U | 2607 | G | 2608 | G | 2609 | * | C | 2534 | G | 2535 | cWW | chH | cWW | |
| 9 | IL_4V9F_086 | 4V9F | 0.0000 | 0 | Major groove platform | 0 | LSU rRNA | U | 2615 | G | 2616 | G | 2617 | * | C | 2542 | G | 2543 | cWW | nchH | cWW | |
| 10 | IL_8CRE_115 | 8CRE | 0.0933 | 0 | Major groove platform (H) | 1 | LSU rRNA | U | 2921 | G | 2922 | G | 2923 | * | C | 2848 | G | 2849 | cWW | cWW | ||
| 11 | IL_8P9A_334 | 8P9A | 0.0925 | 0 | Major groove platform (H) | AR | LSU rRNA | U | 2949 | G | 2950 | G | 2951 | * | C | 2876 | G | 2877 | cWW | cWW | ||
| 12 | IL_5XTM_004 | 5XTM | 0.4414 | 0 | Major groove intercalation | D | RNA (47-MER) | U | 3 | A | 4 | U | 5 | * | A | 44 | G | 45 | cWW | cWW | ||
| 13 | IL_5DCV_005 | 5DCV | 0.5076 | 0 | Major groove intercalation | D | RNA (47-MER) | U | 3 | A | 4 | U | 5 | * | A | 48 | G | 49 | cWW | cWW | ||
| 14 | IL_1U6B_010 | 1U6B | 0.5314 | 0 | Major groove intercalation | B | 197-MER | U | 160 | A | 161 | U | 162 | * | A | 150 | G | 151 | cWW | cWW | ||
| 15 | IL_5VCI_004 | 5VCI | 0.5369 | 0 | Major groove intercalation | B+A | RNA (12-mer) | U | 2 | A | 3 | U | 4 | * | A | 11 | G | 12 | cWW | cWW | ||
| 16 | IL_4PCJ_004 | 4PCJ | 0.5706 | 0 | Major groove intercalation | A | trCUG-3('5) | U | 25 | A | 26 | U | 27 | * | A | 11 | G | 12 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*CG | 6 |
| UAU*AG | 5 |
| UUG*UG | 2 |
| (PSU)GA*UG | 1 |
| (PSU)GG*CG | 1 |
| UCG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G* | 8 |
| A* | 5 |
| U* | 2 |
| C* | 1 |
- Annotations
-
- Major groove platform (6)
- Major groove intercalation (5)
- Major groove platform (H) (5)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.06 | Avg 0.35 | Max 0.67
Coloring options: