IL_5JC9_390

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_390 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0219

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5JC9|1|DA|G|1666
5JC9|1|DA|G|1667
5JC9|1|DA|A|1668
5JC9|1|DA|A|1669
5JC9|1|DA|C|1670
5JC9|1|DA|U|1671
5JC9|1|DA|A|1672
5JC9|1|DA|G|1673
5JC9|1|DA|G|1674
*
5JC9|1|DA|C|1990
5JC9|1|DA|U|1991
5JC9|1|DA|G|1992
5JC9|1|DA|U|1993
5JC9|1|DA|C|1994

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DL

50S ribosomal protein L14