IL_5JC9_391

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_391 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0279

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5JC9|1|DA|U|1851
5JC9|1|DA|U|1852
5JC9|1|DA|A|1853
5JC9|1|DA|A|1854
5JC9|1|DA|U|1855
5JC9|1|DA|U|1856
5JC9|1|DA|G|1857
5JC9|1|DA|A|1858
5JC9|1|DA|U|1859
5JC9|1|DA|G|1860
*
5JC9|1|DA|U|1882
5JC9|1|DA|U|1883
5JC9|1|DA|G|1884
5JC9|1|DA|A|1885
5JC9|1|DA|U|1886
5JC9|1|DA|C|1887
5JC9|1|DA|G|1888
5JC9|1|DA|A|1889
5JC9|1|DA|A|1890
5JC9|1|DA|G|1891

Current chains

Chain DA

23S rRNA

Nearby chains