IL_5JC9_397

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CG*(PSU)GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_397 not in the Motif Atlas

Homologous match to IL_5J7L_394

Geometric discrepancy: 0.0407

The information below is about IL_5J7L_394

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5JC9|1|DA|C|2507
5JC9|1|DA|G|2508
*
5JC9|1|DA|PSU|2580
5JC9|1|DA|G|2581
5JC9|1|DA|G|2582

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3