IL_5JCS_001

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JCS_001 not in the Motif Atlas

Geometric match to IL_2QWY_008

Geometric discrepancy: 0.2623

The information below is about IL_2QWY_008

Detailed Annotation

Single stack bend with SAM intercalation

Broad Annotation

Single stack bend with SAM intercalation

Motif group

IL_75501.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5JCS|1|x|C|379
5JCS|1|x|U|380
5JCS|1|x|U|381
*
5JCS|1|x|A|389
5JCS|1|x|G|390

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain Y

60S ribosomal protein L26-A