IL_5JCS_002

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JCS_002 not in the Motif Atlas

Homologous match to IL_5TBW_016

Geometric discrepancy: 0.2777

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5JCS|1|x|U|429
5JCS|1|x|U|430
5JCS|1|x|U|431
*
5JCS|1|x|A|628
5JCS|1|x|U|629
5JCS|1|x|A|630

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L33-A

Chain y

5.8S ribosomal RNA; 5.8S rRNA