3D structure

PDB id
5JCS (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CCGAAAGA*UCUAGUAGCUG
Length
19 nucleotides
Bulged bases
5JCS|1|x|A|933, 5JCS|1|x|G|937
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5JCS|1|x|C|803
5JCS|1|x|C|804
5JCS|1|x|G|805
5JCS|1|x|A|806
5JCS|1|x|A|807
5JCS|1|x|A|808
5JCS|1|x|G|809
5JCS|1|x|A|810
*
5JCS|1|x|U|930
5JCS|1|x|C|931
5JCS|1|x|U|932
5JCS|1|x|A|933
5JCS|1|x|G|934
5JCS|1|x|U|935
5JCS|1|x|A|936
5JCS|1|x|G|937
5JCS|1|x|C|938
5JCS|1|x|U|939
5JCS|1|x|G|940

Current chains

Chain x
25S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain L
60S ribosomal protein L13-A
Chain N
60S ribosomal protein L15-A
Chain a
60S ribosomal protein L28
Chain j
60S ribosomal protein L37-A

Coloring options:

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