IL_5JCS_013

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCCAUUUUU*AGAACUGGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|G|1117
5JCS|1|x|C|1118
5JCS|1|x|C|1119
5JCS|1|x|A|1120
5JCS|1|x|U|1121
5JCS|1|x|U|1122
5JCS|1|x|U|1123
5JCS|1|x|U|1124
5JCS|1|x|U|1125
*
5JCS|1|x|A|1133
5JCS|1|x|G|1134
5JCS|1|x|A|1135
5JCS|1|x|A|1136
5JCS|1|x|C|1137
5JCS|1|x|U|1138
5JCS|1|x|G|1139
5JCS|1|x|G|1140
5JCS|1|x|C|1141

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain z

5S ribosomal RNA; 5S rRNA