3D structure

PDB id
5JCS (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CGUGGA*UCUAGUG
Length
13 nucleotides
Bulged bases
5JCS|1|x|G|1429
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5JCS|1|x|C|1376
5JCS|1|x|G|1377
5JCS|1|x|U|1378
5JCS|1|x|G|1379
5JCS|1|x|G|1380
5JCS|1|x|A|1381
*
5JCS|1|x|U|1425
5JCS|1|x|C|1426
5JCS|1|x|U|1427
5JCS|1|x|A|1428
5JCS|1|x|G|1429
5JCS|1|x|U|1430
5JCS|1|x|G|1431

Current chains

Chain x
25S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain a
60S ribosomal protein L28
Chain y
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:

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