IL_5JCS_022

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCCGGAAUUG*CGGAGAUGGG

Length

20 nucleotides

Bulged bases

5JCS|1|x|U|1716, 5JCS|1|x|A|1729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|C|1709
5JCS|1|x|C|1710
5JCS|1|x|C|1711
5JCS|1|x|G|1712
5JCS|1|x|G|1713
5JCS|1|x|A|1714
5JCS|1|x|A|1715
5JCS|1|x|U|1716
5JCS|1|x|U|1717
5JCS|1|x|G|1718
*
5JCS|1|x|C|1726
5JCS|1|x|G|1727
5JCS|1|x|G|1728
5JCS|1|x|A|1729
5JCS|1|x|G|1730
5JCS|1|x|A|1731
5JCS|1|x|U|1732
5JCS|1|x|G|1733
5JCS|1|x|G|1734
5JCS|1|x|G|1735

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain Z

60S ribosomal protein L27-A

Chain c

60S ribosomal protein L30

Chain g

60S ribosomal protein L34-A

Chain p

60S ribosomal protein L43-A