IL_5JCS_023

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UCCGUAAC*GGAUAAGGA

Length

17 nucleotides

Bulged bases

5JCS|1|x|U|1931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|U|1916
5JCS|1|x|C|1917
5JCS|1|x|C|1918
5JCS|1|x|G|1919
5JCS|1|x|U|1920
5JCS|1|x|A|1921
5JCS|1|x|A|1922
5JCS|1|x|C|1923
*
5JCS|1|x|G|1928
5JCS|1|x|G|1929
5JCS|1|x|A|1930
5JCS|1|x|U|1931
5JCS|1|x|A|1932
5JCS|1|x|A|1933
5JCS|1|x|G|1934
5JCS|1|x|G|1935
5JCS|1|x|A|1936

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain p

60S ribosomal protein L43-A