IL_5JCS_027

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AUUGCGAUGGUC*GAUGUUGACGCAAU

Length

26 nucleotides

Bulged bases

5JCS|1|x|U|2159, 5JCS|1|x|U|2175, 5JCS|1|x|C|2179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|A|2152
5JCS|1|x|U|2153
5JCS|1|x|U|2154
5JCS|1|x|G|2155
5JCS|1|x|C|2156
5JCS|1|x|G|2157
5JCS|1|x|A|2158
5JCS|1|x|U|2159
5JCS|1|x|G|2160
5JCS|1|x|G|2161
5JCS|1|x|U|2162
5JCS|1|x|C|2163
*
5JCS|1|x|G|2171
5JCS|1|x|A|2172
5JCS|1|x|U|2173
5JCS|1|x|G|2174
5JCS|1|x|U|2175
5JCS|1|x|U|2176
5JCS|1|x|G|2177
5JCS|1|x|A|2178
5JCS|1|x|C|2179
5JCS|1|x|G|2180
5JCS|1|x|C|2181
5JCS|1|x|A|2182
5JCS|1|x|A|2183
5JCS|1|x|U|2184

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L43-A

Chain r

Protein SDA1