IL_5JCS_028

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

5JCS|1|x|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JCS_028 not in the Motif Atlas

Homologous match to IL_8P9A_314

Geometric discrepancy: 0.3218

The information below is about IL_8P9A_314

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5JCS|1|x|C|2204
5JCS|1|x|U|2205
5JCS|1|x|G|2206
*
5JCS|1|x|C|2237
5JCS|1|x|G|2238

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain r

Protein SDA1