IL_5JCS_031

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCAAAUGCCUCGUC*GACGCG

Length

20 nucleotides

Bulged bases

5JCS|1|x|A|2281, 5JCS|1|x|C|2287, 5JCS|1|x|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|C|2277
5JCS|1|x|C|2278
5JCS|1|x|A|2279
5JCS|1|x|A|2280
5JCS|1|x|A|2281
5JCS|1|x|U|2282
5JCS|1|x|G|2283
5JCS|1|x|C|2284
5JCS|1|x|C|2285
5JCS|1|x|U|2286
5JCS|1|x|C|2287
5JCS|1|x|G|2288
5JCS|1|x|U|2289
5JCS|1|x|C|2290
*
5JCS|1|x|G|2302
5JCS|1|x|A|2303
5JCS|1|x|C|2304
5JCS|1|x|G|2305
5JCS|1|x|C|2306
5JCS|1|x|G|2307

Current chains

Chain x

25S ribosomal RNA

Nearby chains